Publications

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Book Chapter
Nath, R., S. Tomov, and J. Dongarra, “Blas for GPUs,” Scientific Computing with Multicore and Accelerators, Boca Raton, Florida, CRC Press, 2010.  (1.05 MB)
Conference Paper
Kashi, A., P. Nayak, D. Kulkarni, A. Scheinberg, P. Lin, and H. Anzt, “Batched sparse iterative solvers on GPU for the collision operator for fusion plasma simulations,” 2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS), Lyon, France, IEEE, July 2022.  (1.26 MB)
Nicolae, B., J. Li, J. M. Wozniak, G. Bosilca, M. Dorier, and F. Cappello, “DeepFreeze: Towards Scalable Asynchronous Checkpointing of Deep Learning Models,” 20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing (CCGRID), Melbourne, VIC, Australia, IEEE, May 2020.  (424.19 KB)
Marin, G., C. McCurdy, and J. Vetter, “Diagnosis and Optimization of Application Prefetching Performance,” Proceedings of the 27th ACM International Conference on Supercomputing (ICS '13), Eugene, Oregon, USA, ACM Press, June 2013.  (827.31 KB)
Li, J., G. Bosilca, A. Bouteiller, and B. Nicolae, “Elastic deep learning through resilient collective operations,” SC-W 2023: Workshops of The International Conference on High Performance Computing, Network, Storage, and Analysis, Denver, CO, ACM, November 2023.
Schuchart, J., P. Nookala, M. Mahdi Javanmard, T. Herault, E. F. Valeev, G. Bosilca, and R. J. Harrison, “Generalized Flow-Graph Programming Using Template Task-Graphs: Initial Implementation and Assessment,” 2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS), Lyon, France, IEEE, July 2022.
Newburn, C. J., G. Bansal, M. Wood, L. Crivelli, J. Planas, A. Duran, P. Souza, L. Borges, P. Luszczek, S. Tomov, et al., “Heterogeneous Streaming,” The Sixth International Workshop on Accelerators and Hybrid Exascale Systems (AsHES), IPDPS 2016, Chicago, IL, IEEE, May 2016.  (2.73 MB)
Archibald, R., E. Chow, E. D'Azevedo, J. Dongarra, M. Eisenbach, R. Febbo, F. Lopez, D. Nichols, S. Tomov, K. Wong, et al., “Integrating Deep Learning in Domain Sciences at Exascale,” 2020 Smoky Mountains Computational Sciences and Engineering Conference (SMC 2020), August 2020.
Nichols, D., K. Wong, S. Tomov, L. Ng, S. Chen, and A. Gessinger, “MagmaDNN: Accelerated Deep Learning Using MAGMA,” Practice and Experience in Advanced Research Computing (PEARC ’19), Chicago, IL, ACM, July 2019.  (1.09 MB)
Nichols, D., K. Wong, S. Tomov, L. Ng, S. Chen, and A. Gessinger, “MagmaDNN: Accelerated Deep Learning Using MAGMA,” Practice and Experience in Advanced Research Computing (PEARC ’19), Chicago, IL, ACM, July 2019.  (1.09 MB)
Nichols, D., N-S. Tomov, F. Betancourt, S. Tomov, K. Wong, and J. Dongarra, “MagmaDNN: Towards High-Performance Data Analytics and Machine Learning for Data-Driven Scientific Computing,” ISC High Performance, Frankfurt, Germany, Springer International Publishing, June 2019.  (1.37 MB) (8.72 MB)
Betancourt, F., K. Wong, E. Asemota, Q. Marshall, D. Nichols, and S. Tomov, “OpenDIEL: A Parallel Workflow Engine and DataAnalytics Framework,” Practice and Experience in Advanced Research Computing (PEARC ’19), Chicago, IL, ACM, July 2019.  (1.48 MB)
Moore, S., D. Cronk, F. Wolf, A. Purkayastha, P. J. Teller, R. Araiza, G. Aguilera, and J. Nava, “Performance Profiling and Analysis of DoD Applications using PAPI and TAU,” Proceedings of DoD HPCMP UGC 2005, Nashville, TN, IEEE, June 2005.  (322.56 KB)
Aggarwal, I., P. Nayak, A. Kashi, and H. Anzt, “Preconditioners for Batched Iterative Linear Solvers on GPUs,” Smoky Mountains Computational Sciences and Engineering Conference, vol. 169075: Springer Nature Switzerland, pp. 38 - 53, January 2023.
Schuchart, J., P. Nookala, T. Herault, E. F. Valeev, and G. Bosilca, “Pushing the Boundaries of Small Tasks: Scalable Low-Overhead Data-Flow Programming in TTG,” 2022 IEEE International Conference on Cluster Computing (CLUSTER), Heidelberg, Germany, IEEE, September 2022.
Nance, D., S. Tomov, and K. Wong, “A Python Library for Matrix Algebra on GPU and Multicore Architectures,” 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems (MASS), Denver, CO, IEEE, December 2022.  (414.36 KB)
Schuchart, J., C. Niethammer, J. Gracia, and G. Bosilca, “Quo Vadis MPI RMA? Towards a More Efficient Use of MPI One-Sided Communication,” EuroMPI'21, Garching, Munich Germany, 2021.  (835.27 KB)
Bosilca, G., R. Harrison, T. Herault, M. Mahdi Javanmard, P. Nookala, and E. Valeev, “The Template Task Graph (TTG) - An Emerging Practical Dataflow Programming Paradigm for Scientific Simulation at Extreme Scale,” 2020 IEEE/ACM 5th International Workshop on Extreme Scale Programming Models and Middleware (ESPM2): IEEE, November 2020.  (139.6 KB)
Haidar, A., M. Gates, S. Tomov, and J. Dongarra, “Toward a scalable multi-GPU eigensolver via compute-intensive kernels and efficient communication,” Proceedings of the 27th ACM International Conference on Supercomputing (ICS '13), Eugene, Oregon, USA, ACM Press, June 2013.  (1.27 MB)
Anzt, H., Y. Chen Chen, T. Cojean, J. Dongarra, G. Flegar, P. Nayak, E. S. Quintana-Orti, Y. M. Tsai, and W. Wang, “Towards Continuous Benchmarking,” Platform for Advanced Scientific Computing Conference (PASC 2019), Zurich, Switzerland, ACM Press, June 2019.  (1.51 MB)
Tseng, S-M., B. Nicolae, G. Bosilca, E. Jeannot, A. Chandramowlishwaran, and F. Cappello, “Towards Portable Online Prediction of Network Utilization Using MPI-Level Monitoring,” 2019 European Conference on Parallel Processing (Euro-Par 2019), Göttingen, Germany, Springer, August 2019.  (1.07 MB)
Li, J., B. Nicolae, J. M. Wozniak, and G. Bosilca, “Understanding Scalability and Fine-Grain Parallelism of Synchronous Data Parallel Training,” 2019 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC), Denver, CO, IEEE, November 2019.  (696.89 KB)
Conference Proceedings
Bouteiller, A., T. Herault, G. Bosilca, and J. Dongarra, “Correlated Set Coordination in Fault Tolerant Message Logging Protocols,” Proceedings of 17th International Conference, Euro-Par 2011, Part II, vol. 6853, Bordeaux, France, Springer, pp. 51-64, August 2011.  (486.68 KB)
Tomov, S., R. Nath, H. Ltaeif, and J. Dongarra, “Dense Linear Algebra Solvers for Multicore with GPU Accelerators,” Parallel Distributed Processing, Workshops and Phd Forum (IPDPSW), 2010 IEEE International Symposium on, Atlanta, GA, pp. 1-8, 2010.  (1 MB)
Anzt, H., E. Chow, D. Szyld, and J. Dongarra, “Domain Overlap for Iterative Sparse Triangular Solves on GPUs,” Software for Exascale Computing - SPPEXA, vol. 113: Springer International Publishing, pp. 527–545, September 2016.
Anzt, H., E. Chow, D. Szyld, and J. Dongarra, “Domain Overlap for Iterative Sparse Triangular Solves on GPUs,” Software for Exascale Computing - SPPEXA, vol. 113: Springer International Publishing, pp. 527–545, September 2016.
Dongarra, J., S. Moore, G. D. Peterson, S. Tomov, J. Allred, V. Natoli, and D. Richie, “Exploring New Architectures in Accelerating CFD for Air Force Applications,” Proceedings of the DoD HPCMP User Group Conference, Seattle, Washington, January 2008.  (492.86 KB)
Whitlock, M., N. Morales, G. Bosilca, A. Bouteiller, B. Nicolae, K. Teranishi, E. Giem, and V. Sarkar, “Integrating process, control-flow, and data resiliency layers using a hybrid Fenix/Kokkos approach,” 2022 IEEE International Conference on Cluster Computing (CLUSTER 2022), Heidelberg, Germany, September 2022.
Supinski, B. R. de, S. Alam, D. Bailey, L. Carrington, C. Daley, A. Dubey, T. Gamblin, D. Gunter, P. D. Hovland, H. Jagode, et al., “Modeling the Office of Science Ten Year Facilities Plan: The PERI Architecture Tiger Team,” SciDAC 2009, Journal of Physics: Conference Series, vol. 180(2009)012039, San Diego, California, IOP Publishing, July 2009.  (906.39 KB)
Li, Y., J. Dongarra, and S. Tomov, “A Note on Auto-tuning GEMM for GPUs,” 9th International Conference on Computational Science (ICCS 2009), no. 5544-5545, Baton Rouge, LA, pp. 884-892, May 2009.  (236.02 KB)
Nath, R., S. Tomov, T. Dong, and J. Dongarra, “Optimizing Symmetric Dense Matrix-Vector Multiplication on GPUs,” ACM/IEEE Conference on Supercomputing (SC’11), Seattle, WA, November 2011.  (630.63 KB)
Seymour, K., H. Nakada, S. Matsuoka, J. Dongarra, C. Lee, and H. Casanova, “Overview of GridRPC: A Remote Procedure Call API for Grid Computing,” Proceedings of the Third International Workshop on Grid Computing, pp. 274-278, January 2002.  (221.82 KB)
Cao, Q., S. Abdulah, R. Alomairy, Y. Pei, P. Nag, G. Bosilca, J. Dongarra, M. G. Genton, D. Keyes, H. Ltaief, et al., “Reshaping Geostatistical Modeling and Prediction for Extreme-Scale Environmental Applications,” 2022 International Conference for High Performance Computing, Networking, Storage and Analysis (SC22), Dallas, TX, IEEE Press, November 2022.
Bosilca, G., T. Herault, P. Lemariner, J. Dongarra, and A.. Rezmerita, “Scalable Runtime for MPI: Efficiently Building the Communication Infrastructure,” Proceedings of Recent Advances in the Message Passing Interface - 18th European MPI Users' Group Meeting, EuroMPI 2011, vol. 6960, Santorini, Greece, Springer, pp. 342-344, September 2011.  (115.75 KB)
Ramakrishan, L., D. Nurmi, A. Mandal, C. Koelbel, D. Gannon, M. Huang, Y-S. Kee, G. Obertelli, K. Thyagaraja, R. Wolski, et al., “VGrADS: Enabling e-Science Workflows on Grids and Clouds with Fault Tolerance,” SC’09 The International Conference for High Performance Computing, Networking, Storage and Analysis (to appear), Portland, OR, 00 2009.  (648.82 KB)
Journal Article
Nath, R., S. Tomov, and J. Dongarra, “Accelerating GPU Kernels for Dense Linear Algebra,” Proc. of VECPAR'10, Berkeley, CA, June 2010.  (615.07 KB)
Tomov, S., R. Nath, and J. Dongarra, “Accelerating the Reduction to Upper Hessenberg, Tridiagonal, and Bidiagonal Forms through Hybrid GPU-Based Computing,” Parallel Computing, vol. 36, no. 12, pp. 645-654, 00 2010.  (1.39 MB)
Moore, S., A.J.. Baker, J. Dongarra, C. Halloy, and C. Ng, “Active Netlib: An Active Mathematical Software Collection for Inquiry-based Computational Science and Engineering Education,” Journal of Digital Information special issue on Interactivity in Digital Libraries, vol. 2, no. 4, 00 2002.  (182.59 KB)
Nelson, J., “Analyzing PAPI Performance on Virtual Machines,” VMWare Technical Journal, vol. Winter 2013, January 2014.
Balaprakash, P., J. Dongarra, T. Gamblin, M. Hall, J. Hollingsworth, B. Norris, and R. Vuduc, “Autotuning in High-Performance Computing Applications,” Proceedings of the IEEE, vol. 106, issue 11, pp. 2068–2083, November 2018.  (2.5 MB)
Schuchart, J., P. Samfass, C. Niethammer, J. Gracia, and G. Bosilca, “Callback-based completion notification using MPI Continuations,” Parallel Computing, vol. 21238566, issue 0225, pp. 102793, May Jan.
“Computational Science – ICCS 2009, Proceedings of the 9th International Conference,” Lecture Notes in Computer Science: Theoretical Computer Science and General Issues, vol. -, no. 5544-5545, Baton Rouge, LA, May 2009.
Agarwal, P., R. A.. Alexander, E.. Apra, S. Balay, A. S. Bland, J. Colgan, E. D'Azevedo, J. Dongarra, T. Dunigan, M. Fahey, et al., “Cray X1 Evaluation Status Report,” Oak Ridge National Laboratory Report, vol. /-2004/13, January 2004.  (817.33 KB)
Agarwal, P., R. A.. Alexander, E.. Apra, S. Balay, A. S. Bland, J. Colgan, E. D'Azevedo, J. Dongarra, T. Dunigan, M. Fahey, et al., “Cray X1 Evaluation Status Report,” Oak Ridge National Laboratory Report, vol. /-2004/13, January 2004.  (817.33 KB)
Nayak, P., T. Cojean, and H. Anzt, “Evaluating Asynchronous Schwarz Solvers on GPUs,” International Journal of High Performance Computing Applications, August 2020.
Iqbal, Z., S. Nooshabadi, I. Yamazaki, S. Tomov, and J. Dongarra, “Exploiting Block Structures of KKT Matrices for Efficient Solution of Convex Optimization Problems,” IEEE Access, 2021.  (1.35 MB)
Anzt, H., T. Cojean, Y-C. Chen, F. Goebel, T. Gruetzmacher, P. Nayak, T. Ribizel, and Y-H. Tsai, “Ginkgo: A High Performance Numerical Linear Algebra Library,” Journal of Open Source Software, vol. 5, issue 52, August 2020.  (721.84 KB)
Anzt, H., T. Cojean, G. Flegar, F. Göbel, T. Grützmacher, P. Nayak, T. Ribizel, Y. Mike Tsai, and E. S. Quintana-Ortí, “Ginkgo: A Modern Linear Operator Algebra Framework for High Performance Computing,” ACM Transactions on Mathematical Software, vol. 48, issue 12, pp. 1 - 33, March 2022.  (4.2 MB)
Caniou, Y., E. Caron, F. Desprez, H. Nakada, Y. Tanaka, and K. Seymour, “High Performance GridRPC Middleware,” Recent developments in Grid Technology and Applications: Nova Science Publishers, 00 2008.  (923.06 KB)
Ltaeif, H., S. Tomov, R. Nath, and J. Dongarra, “Hybrid Multicore Cholesky Factorization with Multiple GPU Accelerators,” IEEE Transaction on Parallel and Distributed Systems (submitted), March 2010.  (3.75 MB)

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