Publications

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Book
Snir, M., S. Otto, S. Huss-Lederman, D. Walker, and J. Dongarra, MPI - The Complete Reference, Volume 1: The MPI Core , Second, Cambridge, MA, USA, MIT Press, pp. 426, August 1998.
Wyrzykowski, R., E. Deelman, J. Dongarra, and K. Karczewski, “Parallel Processing and Applied Mathematics: 13th International Conference, PPAM 2019, Bialystok, Poland, September 8–11, 2019, Revised Selected Papers, Part I,” Lecture Notes in Computer Science, 1, no. 12043: Springer International Publishing, pp. 581, March 2020.
Wyrzykowski, R., E. Deelman, J. Dongarra, and K. Karczewski, “Parallel Processing and Applied Mathematics: 13th International Conference, PPAM 2019, Bialystok, Poland, September 8–11, 2019, Revised Selected Papers, Part II,” Lecture Notes in Computer Science, no. 12044: Springer International Publishing, pp. 503, March 2020.
Penchoff, D. A., T. L. Windus, and C. C. Peterson, “Rare Earth Elements and Actinides: Progress in Computational Science Applications,” ACS Symposium Series, vol. 1388, Washington, DC, American Chemical Society, October 2021.
Book Chapter
Baboulin, M., J. Dongarra, A. Remy, S. Tomov, and I. Yamazaki, “Dense Symmetric Indefinite Factorization on GPU Accelerated Architectures,” Lecture Notes in Computer Science, vol. 9573: Springer International Publishing, pp. 86-95, September 2015, 2016.  (327.14 KB)
Baboulin, M., J. Dongarra, A. Remy, S. Tomov, and I. Yamazaki, “Dense Symmetric Indefinite Factorization on GPU Accelerated Architectures,” Lecture Notes in Computer Science, vol. 9573: Springer International Publishing, pp. 86-95, September 2015, 2016.  (327.14 KB)
Penchoff, D. A., E. Valeev, H. Jagode, P. Luszczek, A. Danalis, G. Bosilca, R. J. Harrison, J. Dongarra, and T. L. Windus, “An Introduction to High Performance Computing and Its Intersection with Advances in Modeling Rare Earth Elements and Actinides,” Rare Earth Elements and Actinides: Progress in Computational Science Applications, vol. 1388, Washington, DC, American Chemical Society, pp. 3-53, October 2021.
Vetter, J., R. Glassbrook, K. Schwan, S. Yalamanchili, M. Horton, A. Gavrilovska, M. Slawinska, J. Dongarra, J. Meredith, P. Roth, et al., “Keeneland: Computational Science Using Heterogeneous GPU Computing,” Contemporary High Performance Computing: From Petascale Toward Exascale, Boca Raton, FL, Taylor and Francis, 2013.  (2.7 MB)
Bai, Z., J. Demmel, J. Dongarra, J. Langou, and J. Wang, “LAPACK,” Handbook of Linear Algebra, Second, Boca Raton, FL, CRC Press, 2013.  (223.21 KB)
Penchoff, D. A., C. B. Sims, and T. L. Windus, “Rare Earth Elements and Critical Materials: Uses and Availability,” Rare Earth Elements and Actinides: Progress in Computational Science Applications, vol. 1388, Washington, DC, American Chemical Society, pp. 63-74, October 2021.
Conference Paper
Luo, X., W. Wu, G. Bosilca, T. Patinyasakdikul, L. Wang, and J. Dongarra, “ADAPT: An Event-Based Adaptive Collective Communication Framework,” The 27th International Symposium on High-Performance Parallel and Distributed Computing (HPDC '18), Tempe, Arizona, ACM Press, June 2018.  (493.65 KB)
Luo, X., W. Wu, G. Bosilca, T. Patinyasakdikul, L. Wang, and J. Dongarra, “ADAPT: An Event-Based Adaptive Collective Communication Framework,” The 27th International Symposium on High-Performance Parallel and Distributed Computing (HPDC '18), Tempe, Arizona, ACM Press, June 2018.  (493.65 KB)
Thiyagalingam, J., G. von Laszewski, J. Yin, M. Emani, J. Papay, G. Barrett, P. Luszczek, A. Tsaris, C. Kirkpatrick, F. Wang, et al., “AI Benchmarking for Science: Efforts from the MLCommons Science Working Group,” Lecture Notes in Computer Science, vol. 13387: Springer International Publishing, pp. 47 - 64, January 2023.
Whaley, C., and J. Dongarra, “Automatically Tuned Linear Algebra Software,” 1998 ACM/IEEE conference on Supercomputing (SC '98), Orlando, FL, IEEE Computer Society, November 1998.
Mucci, P., J. Dongarra, R. Kufrin, S. Moore, F. Song, and F. Wolf, “Automating the Large-Scale Collection and Analysis of Performance,” 5th LCI International Conference on Linux Clusters: The HPC Revolution, Austin, Texas, May 2004.  (511.6 KB)
Nicolae, B., J. Li, J. M. Wozniak, G. Bosilca, M. Dorier, and F. Cappello, “DeepFreeze: Towards Scalable Asynchronous Checkpointing of Deep Learning Models,” 20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing (CCGRID), Melbourne, VIC, Australia, IEEE, May 2020.  (424.19 KB)
Anzt, H., J. Dongarra, M. Kreutzer, G. Wellein, and M. Kohler, “Efficiency of General Krylov Methods on GPUs – An Experimental Study,” The Sixth International Workshop on Accelerators and Hybrid Exascale Systems (AsHES), Chicago, IL, IEEE, May 2016.  (285.28 KB)
Zhao, Y., L. Wan, W. Wu, G. Bosilca, R. Vuduc, J. Ye, W. Tang, and Z. Xu, “Efficient Communications in Training Large Scale Neural Networks,” ACM MultiMedia Workshop 2017, Mountain View, CA, ACM, October 2017.  (1.41 MB)
Zhao, Y., L. Wan, W. Wu, G. Bosilca, R. Vuduc, J. Ye, W. Tang, and Z. Xu, “Efficient Communications in Training Large Scale Neural Networks,” ACM MultiMedia Workshop 2017, Mountain View, CA, ACM, October 2017.  (1.41 MB)
Wang, L., W. Wu, J. Zhang, H. Liu, G. Bosilca, M. Herlihy, and R. Fonseca, “FFT-Based Gradient Sparsification for the Distributed Training of Deep Neural Networks,” 9th International Symposium on High-Performance Parallel and Distributed Computing (HPDC 20), Stockholm, Sweden, ACM, June 2020.  (4.72 MB)
Wang, L., W. Wu, J. Zhang, H. Liu, G. Bosilca, M. Herlihy, and R. Fonseca, “FFT-Based Gradient Sparsification for the Distributed Training of Deep Neural Networks,” 9th International Symposium on High-Performance Parallel and Distributed Computing (HPDC 20), Stockholm, Sweden, ACM, June 2020.  (4.72 MB)
Cao, Q., G. Bosilca, W. Wu, D. Zhong, A. Bouteiller, and J. Dongarra, “Flexible Data Redistribution in a Task-Based Runtime System,” IEEE International Conference on Cluster Computing (Cluster 2020), Kobe, Japan, IEEE, September 2020.  (354.8 KB)
Wu, W., G. Bosilca, R. vandeVaart, S. Jeaugey, and J. Dongarra, “GPU-Aware Non-contiguous Data Movement In Open MPI,” 25th International Symposium on High-Performance Parallel and Distributed Computing (HPDC'16), Kyoto, Japan, ACM, June 2016.  (482.32 KB)
Luo, X., W. Wu, G. Bosilca, Y. Pei, Q. Cao, T. Patinyasakdikul, D. Zhong, and J. Dongarra, “HAN: A Hierarchical AutotuNed Collective Communication Framework,” IEEE Cluster Conference, Kobe, Japan, Best Paper Award, IEEE Computer Society Press, September 2020.  (764.05 KB)
Wong, K., S. Tomov, and J. Dongarra, “Hands-on Research and Training in High-Performance Data Sciences, Data Analytics, and Machine Learning for Emerging Environments,” ISC High Performance, Frankfurt, Germany, Springer International Publishing, June 2019.  (1016.52 KB)
Newburn, C. J., G. Bansal, M. Wood, L. Crivelli, J. Planas, A. Duran, P. Souza, L. Borges, P. Luszczek, S. Tomov, et al., “Heterogeneous Streaming,” The Sixth International Workshop on Accelerators and Hybrid Exascale Systems (AsHES), IPDPS 2016, Chicago, IL, IEEE, May 2016.  (2.73 MB)
Wu, W., A. Bouteiller, G. Bosilca, M. Faverge, and J. Dongarra, “Hierarchical DAG scheduling for Hybrid Distributed Systems,” 29th IEEE International Parallel & Distributed Processing Symposium (IPDPS), Hyderabad, India, IEEE, May 2015.  (1.11 MB)
Archibald, R., E. Chow, E. D'Azevedo, J. Dongarra, M. Eisenbach, R. Febbo, F. Lopez, D. Nichols, S. Tomov, K. Wong, et al., “Integrating Deep Learning in Domain Sciences at Exascale,” 2020 Smoky Mountains Computational Sciences and Engineering Conference (SMC 2020), August 2020.
Haidar, A., P. Wu, S. Tomov, and J. Dongarra, “Investigating Half Precision Arithmetic to Accelerate Dense Linear System Solvers,” ScalA17: 8th Workshop on Latest Advances in Scalable Algorithms for Large-Scale Systems, Denver, CO, ACM.  (766.35 KB)
Nichols, D., K. Wong, S. Tomov, L. Ng, S. Chen, and A. Gessinger, “MagmaDNN: Accelerated Deep Learning Using MAGMA,” Practice and Experience in Advanced Research Computing (PEARC ’19), Chicago, IL, ACM, July 2019.  (1.09 MB)
Nichols, D., N-S. Tomov, F. Betancourt, S. Tomov, K. Wong, and J. Dongarra, “MagmaDNN: Towards High-Performance Data Analytics and Machine Learning for Data-Driven Scientific Computing,” ISC High Performance, Frankfurt, Germany, Springer International Publishing, June 2019.  (1.37 MB) (8.72 MB)
Tsai, Y-H. Mike, N. Beams, and H. Anzt, “Mixed Precision Algebraic Multigrid on GPUs,” Parallel Processing and Applied Mathematics (PPAM 2022), vol. 13826, Cham, Springer International Publishing, April 2023.
Weaver, V., D. Terpstra, and S. Moore, “Non-Determinism and Overcount on Modern Hardware Performance Counter Implementations,” 2013 IEEE International Symposium on Performance Analysis of Systems and Software, Austin, TX, IEEE, April 2013.  (307.24 KB)
Betancourt, F., K. Wong, E. Asemota, Q. Marshall, D. Nichols, and S. Tomov, “OpenDIEL: A Parallel Workflow Engine and DataAnalytics Framework,” Practice and Experience in Advanced Research Computing (PEARC ’19), Chicago, IL, ACM, July 2019.  (1.48 MB)
Sid-Lakhdar, W., S. Cayrols, D. Bielich, A. Abdelfattah, P. Luszczek, M. Gates, S. Tomov, H. Johansen, D. Williams-Young, T. Davis, et al., “PAQR: Pivoting Avoiding QR factorization,” 2023 IEEE International Parallel and Distributed Processing Symposium (IPDPS), St. Petersburg, FL, USA, IEEE, 2023.
Wang, Y., M. Baboulin, J. Falcou, Y. Fraigneau, and O. Le Maître, “A Parallel Solver for Incompressible Fluid Flows,” International Conference on Computational Science (ICCS 2013), Barcelona, Spain, Elsevier B.V., June 2013.  (588.79 KB)
Moore, S., D. Cronk, F. Wolf, A. Purkayastha, P. J. Teller, R. Araiza, G. Aguilera, and J. Nava, “Performance Profiling and Analysis of DoD Applications using PAPI and TAU,” Proceedings of DoD HPCMP UGC 2005, Nashville, TN, IEEE, June 2005.  (322.56 KB)
Nance, D., S. Tomov, and K. Wong, “A Python Library for Matrix Algebra on GPU and Multicore Architectures,” 2022 IEEE 19th International Conference on Mobile Ad Hoc and Smart Systems (MASS), Denver, CO, IEEE, December 2022.  (414.36 KB)
Mattson, T., D. Bader, J. Berry, A. Buluc, J. Dongarra, C. Faloutsos, J. Feo, J. Gilbert, J. Gonzalez, B. Hendrickson, et al., “Standards for Graph Algorithm Primitives,” 17th IEEE High Performance Extreme Computing Conference (HPEC '13), Waltham, MA, IEEE, September 2013.  (108.86 KB)
Slaughter, E., W. Wu, Y. Fu, L. Brandenburg, N. Garcia, W. Kautz, E. Marx, K. S. Morris, Q. Cao, G. Bosilca, et al., “Task Bench: A Parameterized Benchmark for Evaluating Parallel Runtime Performance,” International Conference for High Performance Computing Networking, Storage, and Analysis (SC20): ACM, November 2020.  (644.92 KB)
Anzt, H., Y. Chen Chen, T. Cojean, J. Dongarra, G. Flegar, P. Nayak, E. S. Quintana-Orti, Y. M. Tsai, and W. Wang, “Towards Continuous Benchmarking,” Platform for Advanced Scientific Computing Conference (PASC 2019), Zurich, Switzerland, ACM Press, June 2019.  (1.51 MB)
Li, J., B. Nicolae, J. M. Wozniak, and G. Bosilca, “Understanding Scalability and Fine-Grain Parallelism of Synchronous Data Parallel Training,” 2019 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC), Denver, CO, IEEE, November 2019.  (696.89 KB)
McCraw, H., A. Danalis, G. Bosilca, J. Dongarra, K. Kowalski, and T. Windus, “Utilizing Dataflow-based Execution for Coupled Cluster Methods,” 2014 IEEE International Conference on Cluster Computing, no. ICL-UT-14-02, Madrid, Spain, IEEE, September 2014.  (260.23 KB)
Conference Proceedings
“,” 7th International parallel Processing and Applied Mathematics Conference, Lecture Notes in Comptuer Science, vol. 4967, Gdansk, Poland, Springer Berlin, January 2008.
“,” 7th International parallel Processing and Applied Mathematics Conference, Lecture Notes in Comptuer Science, vol. 4967, Gdansk, Poland, Springer Berlin, January 2008.
“8th International Conference on Parallel Processing and Applied Mathematics, Lecture Notes in Computer Science (LNCS),” PPAM 2009 Proceedings, vol. 6067, Wroclaw, Poland, Springer, September 2010.
“8th International Conference on Parallel Processing and Applied Mathematics, Lecture Notes in Computer Science (LNCS),” PPAM 2009 Proceedings, vol. 6067, Wroclaw, Poland, Springer, September 2010.
Song, F., F. Wolf, N. Bhatia, J. Dongarra, and S. Moore, “An Algebra for Cross-Experiment Performance Analysis,” 2004 International Conference on Parallel Processing (ICCP-04), Montreal, Quebec, Canada, August 2004.  (166.12 KB)
Bhatia, N., F. Song, F. Wolf, J. Dongarra, B. Mohr, and S. Moore, “Automatic Experimental Analysis of Communication Patterns in Virtual Topologies,” In Proceedings of the International Conference on Parallel Processing, Oslo, Norway, IEEE Computer Society, June 2005.  (227.13 KB)
Weaver, V. M., and J. Dongarra, “Can Hardware Performance Counters Produce Expected, Deterministic Results?,” 3rd Workshop on Functionality of Hardware Performance Monitoring, Atlanta, GA, December 2010.  (392.71 KB)

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